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General
API
EHRData
ehrdata.EHRData
ehrdata.infer_feature_types
ehrdata.feature_type_overview
ehrdata.replace_feature_types
ehrdata.harmonize_missing_values
ehrdata.move_to_obs
ehrdata.move_to_x
Datasets
ehrdata.dt.ehrdata_blobs
ehrdata.dt.mimic_iv_omop
ehrdata.dt.gibleed_omop
ehrdata.dt.synthea27nj_omop
ehrdata.dt.physionet2012
ehrdata.dt.physionet2019
ehrdata.dt.mimic_2
ehrdata.dt.mimic_2_preprocessed
ehrdata.dt.diabetes_130_raw
ehrdata.dt.diabetes_130_fairlearn
Reading and writing
ehrdata.io.read_csv
ehrdata.io.read_h5ad
ehrdata.io.read_zarr
ehrdata.io.write_h5ad
ehrdata.io.write_zarr
ehrdata.io.from_pandas
ehrdata.io.to_pandas
ehrdata.io.omop.setup_connection
ehrdata.io.omop.setup_obs
ehrdata.io.omop.setup_variables
ehrdata.io.omop.setup_interval_variables
Integrations
ehrdata.integrations.torch.OMOPEHRDataset
ehrdata.integrations.vitessce.gen_default_config
Changelog
Contributing guide
References
Gallery
Tutorials
Getting started with
EHRData
Real Data Example: PhysioNet Challenge 2019 Data in the
EHRData
Format
Loading Data from OMOP Common Data Model into
EHRData
Deep Learning on OMOP Data in
EHRData
with
PyPOTS
Interactive Visualization of
EHRData
with Vitessce
Advanced: Data Management and Sharing with Lamin
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