Tutorials#
The easiest way to get familiar with ehrdata is to follow along with our tutorials. Many are also designed to work seamlessly in Binder, a free cloud computing platform.
The notebooks can be followed in this order:
Getting Started - Learn the basics of the
EHRDatadata structureReal Dataset Example: PhysioNet 2019 - Work with a public clinical dataset
OMOP Introduction - Learn how to read OMOP data into
EHRDataOMOP Machine Learning - Quickstart to ML workflows based on an OMOP dataset
Interactive Visualization - Explore your data interactively with Vitessce
Advanced: Data Management with LaminDB - Store, share, and track datasets in the cloud
- Getting started with
EHRData - Real Data Example: PhysioNet Challenge 2019 Data in the
EHRDataFormat - Loading Data from OMOP Common Data Model into
EHRData - Deep Learning on OMOP Data in
EHRDatawithPyPOTS - Interactive Visualization of
EHRDatawith Vitessce - Advanced: Data Management and Sharing with Lamin