Index

C

copy() (ehrdata.EHRData method)

D

diabetes_130_fairlearn() (in module ehrdata.dt)

diabetes_130_raw() (in module ehrdata.dt)

E

EHRData (class in ehrdata)

ehrdata_blobs() (in module ehrdata.dt)

F

feature_type_overview() (in module ehrdata) filename (ehrdata.EHRData attribute)

from_adata() (ehrdata.EHRData class method) from_pandas() (in module ehrdata.io)

G

gen_default_config() (in module ehrdata.integrations.vitessce)

gibleed_omop() (in module ehrdata.dt)

H

harmonize_missing_values() (in module ehrdata)

I

infer_feature_types() (in module ehrdata)

is_view (ehrdata.EHRData attribute) isbacked (ehrdata.EHRData attribute)

L

layers (ehrdata.EHRData attribute)

M

mimic_2() (in module ehrdata.dt) mimic_2_preprocessed() (in module ehrdata.dt)

mimic_iv_omop() (in module ehrdata.dt) move_to_obs() (in module ehrdata) move_to_x() (in module ehrdata)

N

n_obs (ehrdata.EHRData attribute)

n_t (ehrdata.EHRData attribute) n_vars (ehrdata.EHRData attribute)

O

obs (ehrdata.EHRData attribute) obs_names (ehrdata.EHRData attribute)

obsm (ehrdata.EHRData attribute) obsp (ehrdata.EHRData attribute) OMOPEHRDataset (class in ehrdata.integrations.torch)

P

physionet2012() (in module ehrdata.dt)

physionet2019() (in module ehrdata.dt)

R

read_csv() (in module ehrdata.io) read_h5ed() (in module ehrdata.io)

read_zarr() (in module ehrdata.io) replace_feature_types() (in module ehrdata)

S

setup_connection() (in module ehrdata.io.omop) setup_interval_variables() (in module ehrdata.io.omop) setup_obs() (in module ehrdata.io.omop)

setup_variables() (in module ehrdata.io.omop) shape (ehrdata.EHRData attribute) synthea27nj_omop() (in module ehrdata.dt)

T

tem (ehrdata.EHRData attribute)

to_pandas() (in module ehrdata.io)

U

uns (ehrdata.EHRData attribute)

V

var (ehrdata.EHRData attribute) var_names (ehrdata.EHRData attribute)

varm (ehrdata.EHRData attribute) varp (ehrdata.EHRData attribute)

W

write_h5ed() (in module ehrdata.io)

write_zarr() (in module ehrdata.io)

X

X (ehrdata.EHRData attribute)