ehrdata.EHRData.from_adata

classmethod EHRData.from_adata(adata, *, tem=None, tidx=None)

Create an EHRData object from an AnnData object.

Parameters:

adata AnnData

Annotated data object.

tem DataFrame | None (default: None)

Time dataframe for describing third axis, see tem attribute.

tidx slice | None (default: None)

A slice for the 3rd dimension. Usually, this will be None here.

Return type:

EHRData

Returns:

An EHRData object extending the AnnData object.